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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ATAC-seq
93
ChIP-seq
23
DNase-seq
14
WGBS
1
Hi-C
Assay category
145
DNA accessibility
93
DNA binding
14
DNA methylation
1
3D chromatin structure
Target of assay
88
histone
88
histone modification
57
broad histone mark
31
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
65
August, 2021
52
November, 2017
40
May, 2024
35
February, 2023
23
June, 2019
11
May, 2023
9
July, 2019
7
August, 2020
6
November, 2018
3
September, 2020
1
March, 2023
1
October, 2017
Available data
215
bed narrowPeak
141
bigWig
92
bam
75
bigBed narrowPeak
64
xls
41
tagAlign
23
bed bed3+
23
bed broadPeak
23
bigBed broadPeak
17
fastq
14
bed bedMethyl
14
bigBed bedMethyl
1
hic
Organism
253
Homo sapiens
Biosample type
234
tissue
18
primary cell
cell line
1
in vitro differentiated cells
Organ
84
heart
82
kidney
64
brain
37
blood vessel
37
vasculature
35
artery
16
epithelium
16
pancreas
3
connective tissue
adipose tissue
2
spleen
1
limb
1
musculature of body
Project
242
AMP
10
HPAP
1
ITG
Genome assembly (visualization)
hg19
2236
GRCh38
5
hg18
Lab
127
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
10
Klaus Kaestner, Upenn
1
ITG
assembly!
hg19
audit.WARNING.category!
inconsistent assembly
biosample_type!
cell line
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
253 results
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Clear Filters
ATAC-seq
ChIP-seq
DNase-seq
WGBS
Hi-C
tissue
kidney
75
left cardiac atrium
40
coronary artery
35
layer of hippocampus
16
caudate nucleus
11
1
+ See 25 more…
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
cardiac fibroblast
1
+ See 3 more…
in vitro differentiated cells
neural progenitor cell
1
See all biosamples
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