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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
ATAC-seq
97
ChIP-seq
17
WGBS
1
Hi-C
Assay category
121
DNA accessibility
97
DNA binding
17
DNA methylation
1
3D chromatin structure
Target of assay
88
histone
88
histone modification
57
broad histone mark
31
narrow histone mark
9
transcription factor
6
RNA binding protein
3
recombinant protein
Date released
65
August, 2021
54
November, 2017
40
May, 2024
35
February, 2023
11
May, 2023
9
July, 2019
9
November, 2018
7
August, 2020
3
September, 2020
2
August, 2017
1
March, 2023
October, 2017
Available data
219
bed narrowPeak
147
bigWig
98
bam
79
bigBed narrowPeak
64
xls
41
tagAlign
23
bed bed3+
23
bed broadPeak
bigBed broadPeak
23
fastq
17
bed bedMethyl
17
bigBed bedMethyl
1
hic
Organism
236
Homo sapiens
Biosample type
219
tissue
11
primary cell
5
cell line
1
in vitro differentiated cells
Organ
81
heart
75
kidney
53
brain
36
blood vessel
36
vasculature
35
artery
14
pancreas
10
epithelium
5
liver
2
adipose tissue
2
connective tissue
2
spleen
1
limb
1
musculature of body
Project
225
AMP
10
HPAP
1
ITG
Genome assembly (visualization)
hg19
2846
GRCh38
5
hg18
Lab
110
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
10
Klaus Kaestner, Upenn
1
ITG
assembly!
hg19
files.file_type!
bigBed broadPeak
month_released!
October, 2017
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
236 results
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ATAC-seq
ChIP-seq
WGBS
Hi-C
tissue
kidney
75
left cardiac atrium
40
coronary artery
35
layer of hippocampus
16
caudate nucleus
11
+ See 15 more…
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
chondrocytes
1
cell line
HepG2
4
1
in vitro differentiated cells
neural progenitor cell
1
See all biosamples
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