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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 122ATAC-seq
  • 97ChIP-seq
  • 23DNase-seq
  • 17WGBS
  • 1Hi-C
Assay category
  • 145DNA accessibility
  • 97DNA binding
  • 17DNA methylation
  • 13D chromatin structure
Target of assay
  • 88histone
  • 88histone modification
  • 57broad histone mark
  • 31narrow histone mark
  • 9transcription factor
  • 6RNA binding protein
  • 3recombinant protein
Date released
  • 65August, 2021
  • 54November, 2017
  • 40May, 2024
  • 35February, 2023
  • 23June, 2019
  • 11May, 2023
  • 9July, 2019
  • 9November, 2018
  • 7August, 2020
  • 3September, 2020
  • 2August, 2017
  • 1March, 2023
  • 1October, 2017
Available data
  • 219bed narrowPeak
  • 148bigWig
  • 99bam
  • 79bigBed narrowPeak
  • 64xls
  • 41tagAlign
  • 24fastq
  • 23bed bed3+
  • 23bed broadPeak
  • 23bigBed broadPeak
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 1hic
Organism
  • 260Homo sapiens
Biosample type
  • 236tissue
  • 18primary cell
  • 5cell line
  • 1in vitro differentiated cells
Organ
  • 84heart
  • 82kidney
  • 64brain
  • 37blood vessel
  • 37vasculature
  • 35artery
  • 16epithelium
  • 16pancreas
  • 5liver
  • 3connective tissue
  • 2adipose tissue
  • 2spleen
  • 1limb
  • 1musculature of body
Project
  • 249AMP
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • hg19
  • 3127GRCh38
  • 5hg18
Lab
  • 134AMP-T2D consortium
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 1ITG
assembly!
  • hg19
BIOSAMPLE
ASSAY

260 results

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Clear Filters
ATAC-seq
ChIP-seq
DNase-seq
WGBS
Hi-C
tissue
kidney75
left cardiac atrium40
coronary artery35
layer of hippocampus16
caudate nucleus111
primary cell
pancreatic alpha cell7
pancreatic beta cell3
glomerular visceral epithelial cell2
kidney tubule cell2
cardiac fibroblast1
cell line
HepG241
in vitro differentiated cells
neural progenitor cell1
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