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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
ChIP-seq
96
total RNA-seq
13
ATAC-seq
2
DNase-seq
2
Hi-C
1
WGBS
1
pCHi-C
Assay category
397
DNA binding
96
Transcription
15
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Target of assay
345
transcription factor
88
recombinant protein
62
RNA binding protein
34
histone
34
histone modification
30
chromatin remodeller
17
broad histone mark
17
narrow histone mark
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
93
February, 2021
57
November, 2018
27
December, 2018
20
January, 2019
20
October, 2019
14
November, 2019
August, 2021
7
March, 2020
5
May, 2021
1
January, 2018
Available data
506
bam
500
bigWig
390
bed narrowPeak
372
fastq
355
bigBed narrowPeak
97
tsv
59
bed broadPeak
59
bigBed broadPeak
17
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
Organism
512
Homo sapiens
Biosample type
1833
tissue
512
cell line
414
primary cell
256
in vitro differentiated cells
3
stem cell
Organ
320
liver
64
artery
64
blood vessel
64
heart
64
vasculature
58
pancreas
55
blood
55
bodily fluid
52
epithelium
12
kidney
Project
508
AMP
4
T1D
Genome assembly (visualization)
507
hg19
456
GRCh38
Lab
512
AMP-T2D consortium
Audit category:
60
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
month_released!
August, 2021
BIOSAMPLE
ASSAY
512 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
pCHi-C
cell line
HepG2
312
5
1
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
1
EndoC_BH1
13
33
3
1
Panc1
6
1
1
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