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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
602
ChIP-seq
443
total RNA-seq
226
ATAC-seq
175
DNase-seq
14
WGBS
14
small RNA-seq
10
Hi-C
9
RRBS
6
single cell RNA-seq
4
FAIRE-seq
1
snATAC-seq
Assay category
602
DNA binding
463
Transcription
406
DNA accessibility
23
DNA methylation
10
3D chromatin structure
Target of assay
523
histone modification
522
histone
268
narrow histone mark
254
broad histone mark
76
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
170
May, 2020
165
August, 2017
162
June, 2019
162
October, 2019
116
July, 2018
93
May, 2019
67
February, 2023
65
April, 2019
65
August, 2021
59
July, 2019
58
November, 2017
40
May, 2024
40
October, 2018
39
May, 2022
39
November, 2019
38
May, 2021
36
December, 2017
22
November, 2018
18
March, 2020
13
October, 2017
11
May, 2023
8
February, 2021
6
April, 2018
6
January, 2019
3
December, 2018
March, 2019
2
September, 2017
1
January, 2018
Available data
1291
bigWig
1255
bam
971
bed narrowPeak
551
bigBed narrowPeak
464
tsv
280
fastq
209
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
144
tagAlign
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
1
tagAlign bed3+
1
txt
Organism
1498
Homo sapiens
Biosample type
1504
tissue
611
primary cell
535
cell line
225
in vitro differentiated cells
3
stem cell
Organ
connective tissue
426
adipose tissue
416
pancreas
268
liver
207
brain
196
heart
168
kidney
106
blood vessel
106
vasculature
97
limb
70
bone element
62
artery
62
musculature of body
31
nerve
30
eye
18
ureter
16
spleen
12
epithelium
12
skeleton
1
pericardium
1
pituitary gland
Project
1502
AMP
2
T1D
Genome assembly (visualization)
1377
GRCh38
1270
hg19
Lab
1349
AMP-T2D consortium
76
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
1
audit script error
Audit category:
13
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
March, 2019
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
1504 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
snATAC-seq
tissue
islet of Langerhans
31
260
40
1
1
1
6
1
liver
83
147
20
2
1
1
1
kidney
20
75
13
1
1
1
coronary artery
3
36
2
heart left ventricle
29
3
2
3
2
1
1
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