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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
430
ChIP-seq
159
total RNA-seq
23
ATAC-seq
5
DNase-seq
3
small RNA-seq
2
Hi-C
2
RRBS
1
WGBS
1
pCHi-C
Assay category
430
DNA binding
162
Transcription
28
DNA accessibility
3
DNA methylation
2
3D chromatin structure
Target of assay
330
transcription factor
83
histone modification
82
histone
81
recombinant protein
55
RNA binding protein
52
narrow histone mark
30
broad histone mark
23
chromatin remodeller
14
control
2
other context
2
other post-translational modification
Date released
265
November, 2017
170
May, 2020
52
November, 2018
50
December, 2017
20
August, 2017
20
May, 2022
18
August, 2021
8
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
2
February, 2021
2
June, 2019
2
March, 2020
Available data
622
bigWig
590
bam
441
bed narrowPeak
395
fastq
358
bigBed narrowPeak
162
tsv
63
bed broadPeak
63
bigBed broadPeak
42
tagAlign
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
tar
2
bedpe bed3+
2
hic
1
bed bed3
hdf5
Organism
626
Homo sapiens
Biosample type
332
cell line
268
tissue
14
in vitro differentiated cells
12
primary cell
Organ
673
pancreas
626
liver
591
connective tissue
428
adipose tissue
324
epithelium
272
heart
225
brain
211
kidney
199
vasculature
193
blood vessel
128
artery
97
limb
74
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
16
spleen
16
vein
12
skeleton
2
pericardium
1
pituitary gland
Project
626
AMP
Genome assembly (visualization)
621
hg19
531
GRCh38
Lab
591
AMP-T2D consortium
20
Karen Mohlke, UNC
15
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
hdf5
tar
BIOSAMPLE
ASSAY
626 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
RRBS
WGBS
pCHi-C
cell line
HepG2
323
5
1
1
1
1
tissue
liver
83
147
20
2
1
1
1
right lobe of liver
7
2
1
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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