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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
45
ATAC-seq
25
ChIP-seq
4
DNase-seq
Assay category
54
Transcription
49
DNA accessibility
25
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
64
February, 2021
35
February, 2023
21
October, 2019
3
July, 2019
3
May, 2019
2
June, 2019
Available data
93
bam
85
bigWig
74
bed narrowPeak
54
tsv
25
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
tagAlign
Organism
128
Homo sapiens
Biosample type
64
cell line
62
tissue
2
primary cell
Organ
674
pancreas
630
liver
588
connective tissue
428
adipose tissue
327
epithelium
272
heart
228
brain
211
kidney
202
vasculature
196
blood vessel
128
artery
97
limb
74
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
16
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
128
AMP
Genome assembly (visualization)
128
GRCh38
93
hg19
Lab
128
AMP-T2D consortium
lab.title!
Struan F.A. Grant, CHOP
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
128 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
cell line
smooth muscle cell of the coronary artery
52
8
4
tissue
coronary artery
36
3
2
tibial artery
1
18
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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