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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
total RNA-seq
121
ATAC-seq
57
ChIP-seq
2
Capture-C
2
Hi-C
Assay category
203
Transcription
121
DNA accessibility
57
DNA binding
2
3D chromatin structure
Target of assay
46
histone
46
histone modification
38
narrow histone mark
11
transcription factor
8
broad histone mark
1
RNA binding protein
Date released
574
February, 2021
335
November, 2017
316
May, 2021
278
August, 2017
260
May, 2020
217
October, 2019
210
June, 2019
164
July, 2018
125
August, 2021
100
July, 2019
97
May, 2019
80
February, 2023
80
November, 2018
77
December, 2017
72
September, 2018
65
April, 2019
59
November, 2019
49
April, 2018
47
October, 2018
40
May, 2024
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
14
October, 2017
12
May, 2023
7
August, 2020
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
3
September, 2020
1
March, 2023
Available data
307
bigWig
301
bam
203
tsv
133
bed narrowPeak
64
xls
43
tagAlign
5
bed bed3+
2
hic
1
bedpe bed3+
Organism
385
Homo sapiens
Biosample type
235
tissue
93
primary cell
34
in vitro differentiated cells
23
cell line
Organ
188
liver
65
kidney
8
embryo
4
connective tissue
3
epithelium
Project
340
AMP
45
T1D
Genome assembly (visualization)
320
hg19
312
GRCh38
Lab
256
AMP-T2D consortium
65
Katalin Susztak, Upenn
45
Kyle Gaulton, UCSD
15
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
8
inconsistent ontology term
month_released!
September, 2017
BIOSAMPLE
ASSAY
385 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
Capture-C
Hi-C
tissue
liver
143
27
kidney
64
1
primary cell
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
T follicular helper cell
2
2
T-helper 1 cell
2
2
T-helper 17 cell
2
2
+ See 21 more…
in vitro differentiated cells
neural progenitor cell
7
10
13
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
14
1
H1-hESC
8
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