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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
148
total RNA-seq
103
ChIP-seq
100
single cell RNA-seq
47
ATAC-seq
25
DNase-seq
2
small RNA-seq
1
Hi-C
Assay category
250
Transcription
103
DNA binding
72
DNA accessibility
1
3D chromatin structure
Target of assay
182
histone
182
histone modification
94
narrow histone mark
broad histone mark
9
RNA binding protein
9
transcription factor
3
control
1
chromatin remodeller
Date released
105
May, 2021
55
September, 2018
48
July, 2018
45
May, 2020
43
April, 2018
39
June, 2019
26
August, 2017
18
July, 2019
October, 2019
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
September, 2020
2
August, 2021
2
February, 2021
2
May, 2019
2
October, 2018
1
March, 2023
Available data
415
bam
411
bigWig
250
tsv
196
fastq
157
bed narrowPeak
77
bigBed narrowPeak
47
tagAlign
37
bed broadPeak
37
bigBed broadPeak
27
bed bed3+
1
bed bed3
1
hic
Organism
426
Homo sapiens
Biosample type
1495
tissue
431
cell line
426
primary cell
224
in vitro differentiated cells
2
stem cell
Organ
185
epithelium
165
pancreas
28
connective tissue
18
kidney
14
brain
10
heart
10
vasculature
9
liver
7
musculature of body
6
blood vessel
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
279
AMP
136
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
491
hg19
426
GRCh38
Lab
279
AMP-T2D consortium
136
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
ITG
Audit category:
26
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
audit script error
month_released!
October, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
426 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
primary cell
monocyte
53
40
13
pancreatic alpha cell
10
4
12
13
pancreatic beta cell
10
4
12
10
pancreatic acinar cell
4
4
12
5
pancreatic ductal cell
4
7
10
4
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