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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
Assay category
169
DNA binding
34
DNA accessibility
12
Transcription
Target of assay
166
histone
166
histone modification
105
narrow histone mark
61
broad histone mark
3
RNA binding protein
3
control
3
transcription factor
Date released
76
October, 2019
63
November, 2017
30
June, 2019
25
May, 2019
12
July, 2019
7
October, 2017
2
November, 2018
Available data
213
bam
212
bigWig
199
bed narrowPeak
126
bigBed narrowPeak
82
tagAlign
46
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
15
fastq
12
tsv
1
tagAlign bed3+
Organism
215
Homo sapiens
Biosample type
201
tissue
14
primary cell
Organ
583
pancreas
555
connective tissue
530
liver
423
adipose tissue
262
heart
237
epithelium
215
brain
190
kidney
190
vasculature
187
blood vessel
128
artery
95
limb
66
bone element
54
blood
54
bodily fluid
45
musculature of body
31
nerve
25
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
215
AMP
Genome assembly (visualization)
215
GRCh38
162
hg19
Lab
215
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
3
missing controlled_by
audit.ERROR.category!
inconsistent ontology term
award.project!
community
BIOSAMPLE
ASSAY
215 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
tissue
brain
11
14
1
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
caudate nucleus
12
1
+ See 71 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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