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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
5
total RNA-seq
1
DNase-seq
Assay category
48
DNA binding
5
Transcription
1
DNA accessibility
Target of assay
25
histone
25
histone modification
22
transcription factor
12
broad histone mark
12
narrow histone mark
4
RNA binding protein
2
chromatin remodeller
1
control
Date released
49
August, 2017
4
February, 2021
1
May, 2021
Available data
54
bam
53
bigWig
49
fastq
43
bed narrowPeak
7
bed bed3+
5
tsv
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
54
Homo sapiens
Biosample type
479
tissue
54
in vitro differentiated cells
22
primary cell
Organ
54
connective tissue
17
embryo
17
epithelium
14
liver
2
pancreas
1
heart
Project
54
AMP
Genome assembly (visualization)
71
hg19
54
GRCh38
Lab
54
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
month_released!
March, 2020
BIOSAMPLE
ASSAY
54 results
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ChIP-seq
total RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
48
4
1
cardiac fibroblast
1
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