Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
893
total RNA-seq
583
ChIP-seq
157
ATAC-seq
145
DNase-seq
15
WGBS
15
small RNA-seq
6
single cell RNA-seq
Assay category
914
Transcription
583
DNA binding
302
DNA accessibility
15
DNA methylation
Target of assay
487
histone modification
486
histone
248
narrow histone mark
238
broad histone mark
93
transcription factor
27
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
162
May, 2020
159
October, 2019
158
August, 2017
131
June, 2019
116
July, 2018
87
May, 2019
64
April, 2019
64
August, 2021
58
July, 2019
57
November, 2017
45
October, 2018
40
May, 2024
38
May, 2021
38
November, 2019
36
December, 2017
35
February, 2023
22
November, 2018
14
October, 2017
12
May, 2023
7
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
March, 2019
2
September, 2017
Available data
1668
bigWig
1658
bam
913
tsv
843
bed narrowPeak
518
bigBed narrowPeak
280
fastq
172
bed bed3+
159
bed broadPeak
144
bigBed broadPeak
116
tagAlign
64
xls
15
bed bedMethyl
15
bigBed bedMethyl
1
tagAlign bed3+
Organism
1808
Homo sapiens
Biosample type
1814
tissue
496
primary cell
407
cell line
in vitro differentiated cells
3
stem cell
Organ
479
connective tissue
421
adipose tissue
386
pancreas
238
liver
201
brain
191
heart
165
kidney
105
blood vessel
105
vasculature
95
limb
66
bone element
62
artery
musculature of body
31
nerve
18
ureter
16
spleen
8
skeleton
3
eye
1
pituitary gland
Project
1812
AMP
2
T1D
Genome assembly (visualization)
1814
GRCh38
1691
hg19
Lab
1696
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
biosample_type!
in vitro differentiated cells
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
1814 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
single cell RNA-seq
tissue
adipose tissue
382
1
2
islet of Langerhans
260
25
22
1
6
liver
147
75
2
1
kidney
20
75
13
bone tissue
58
+ See 133 more…
See all biosamples
Download