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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
560
ChIP-seq
157
ATAC-seq
16
WGBS
16
small RNA-seq
6
single cell RNA-seq
1
DNase-seq
Assay category
918
Transcription
560
DNA binding
158
DNA accessibility
16
DNA methylation
Target of assay
480
histone modification
479
histone
243
narrow histone mark
236
broad histone mark
80
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
162
May, 2020
155
October, 2019
132
August, 2017
116
July, 2018
92
May, 2019
64
April, 2019
64
August, 2021
61
July, 2019
57
November, 2017
45
October, 2018
40
May, 2024
38
May, 2021
38
November, 2019
36
December, 2017
35
February, 2023
14
October, 2017
13
November, 2018
12
May, 2023
9
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
March, 2019
Available data
1709
bigWig
1699
bam
917
tsv
879
bed narrowPeak
554
bigBed narrowPeak
280
fastq
bed bed3+
190
bed broadPeak
175
bigBed broadPeak
116
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
Organism
1646
Homo sapiens
Biosample type
1652
tissue
473
primary cell
405
cell line
147
in vitro differentiated cells
Organ
473
connective tissue
415
adipose tissue
359
pancreas
232
liver
174
brain
164
heart
100
blood vessel
100
vasculature
97
kidney
66
bone element
60
limb
58
artery
29
nerve
15
spleen
10
musculature of body
8
skeleton
1
pituitary gland
Project
1650
AMP
2
T1D
Genome assembly (visualization)
1652
GRCh38
1563
hg19
Lab
1534
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
inconsistent ontology term
Audit category:
11
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bed bed3+
month_released!
April, 2020
BIOSAMPLE
ASSAY
1652 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
DNase-seq
tissue
adipose tissue
382
1
2
islet of Langerhans
260
4
22
6
1
liver
147
72
1
kidney
20
75
bone tissue
58
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