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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
ChIP-seq
11
total RNA-seq
8
DNase-seq
2
ATAC-seq
1
Hi-C
Assay category
167
DNA binding
11
Transcription
10
DNA accessibility
1
3D chromatin structure
Target of assay
167
histone
167
histone modification
117
narrow histone mark
50
broad histone mark
Date released
524
February, 2021
280
November, 2017
249
August, 2017
203
May, 2020
203
May, 2021
189
October, 2019
188
June, 2019
158
July, 2018
94
May, 2019
79
July, 2019
79
November, 2018
75
December, 2017
72
September, 2018
64
April, 2019
49
April, 2018
47
October, 2018
41
August, 2021
40
May, 2024
38
November, 2019
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
14
October, 2017
12
May, 2023
11
March, 2020
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
September, 2020
June, 2018
2
March, 2019
1
March, 2023
Available data
187
bigWig
186
bam
175
bed narrowPeak
66
bigBed narrowPeak
40
tagAlign
11
tsv
8
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
1
hdf5
1
tagAlign bed3+
Organism
189
Homo sapiens
Biosample type
159
tissue
20
primary cell
10
cell line
Organ
76
brain
52
limb
33
blood vessel
33
vasculature
31
nerve
22
epithelium
21
artery
12
kidney
12
vein
8
pancreas
7
heart
6
liver
1
pituitary gland
Project
189
AMP
Genome assembly (visualization)
197
hg19
189
GRCh38
Lab
189
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
files.file_type!
xls
month_released!
June, 2018
BIOSAMPLE
ASSAY
189 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
tissue
tibial nerve
24
4
2
1
tibial artery
18
2
1
heart
5
2
brain
5
1
liver
5
1
+ See 74 more…
primary cell
endothelial cell of umbilical vein
10
2
epithelial cell of proximal tubule
6
kidney glomerular epithelial cell
1
kidney tubule cell
1
cell line
Panc1
6
1
1
glomerular visceral epithelial cell
1
1
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