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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
Assay category
40
DNA binding
Target of assay
29
histone
29
histone modification
19
transcription factor
15
narrow histone mark
14
broad histone mark
chromatin remodeller
4
RNA binding protein
1
recombinant protein
Date released
14
August, 2017
12
November, 2017
11
December, 2017
2
February, 2018
1
October, 2018
Available data
40
bam
40
bed narrowPeak
40
bigWig
40
fastq
19
bigBed narrowPeak
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
9
tagAlign
Organism
40
Homo sapiens
Biosample type
15
in vitro differentiated cells
12
cell line
6
tissue
5
primary cell
2
stem cell
Organ
13
liver
9
pancreas
5
epithelium
4
connective tissue
3
embryo
Project
40
AMP
Genome assembly (visualization)
43
hg19
40
GRCh38
Lab
40
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
40
inconsistent control read length
4
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
December, 2018
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
in vitro differentiated cells
adipocyte
4
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
cell line
HepG2
12
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
stem cell
hESC
2
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