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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
Assay category
74
DNA binding
Target of assay
259
histone modification
258
histone
183
narrow histone mark
74
broad histone mark
53
transcription factor
11
RNA binding protein
9
control
7
recombinant protein
2
chromatin remodeller
Date released
20
August, 2017
20
May, 2024
9
October, 2019
8
February, 2018
6
August, 2021
6
November, 2019
5
December, 2017
Available data
293
bed narrowPeak
292
bigWig
273
bam
bigBed narrowPeak
80
fastq
49
tagAlign
14
bed broadPeak
10
bed bed3+
7
bigBed broadPeak
Organism
74
Homo sapiens
Biosample type
primary cell
37
tissue
30
in vitro differentiated cells
6
cell line
1
stem cell
Organ
23
heart
12
connective tissue
11
pancreas
6
epithelium
6
liver
4
embryo
3
brain
Project
74
AMP
Genome assembly (visualization)
74
GRCh38
67
hg19
Lab
54
AMP-T2D consortium
20
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
biosample_type!
primary cell
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
74 results
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ChIP-seq
tissue
left cardiac atrium
20
liver
6
islet of Langerhans
5
brain
3
heart
3
in vitro differentiated cells
adipocyte
12
neural progenitor cell
6
pancreatic endoderm
4
definitive endodermal cell
2
primitive gut cell
2
+ See 4 more…
cell line
EndoC_BH1
6
stem cell
hESC
1
See all biosamples
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