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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
287
ChIP-seq
104
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
287
DNA binding
104
Transcription
12
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
254
transcription factor
88
recombinant protein
47
RNA binding protein
30
histone
30
histone modification
16
broad histone mark
14
chromatin remodeller
14
narrow histone mark
2
other context
2
other post-translational modification
Date released
214
November, 2017
92
February, 2021
43
November, 2018
20
October, 2019
13
November, 2019
8
August, 2021
5
January, 2019
5
March, 2020
5
May, 2021
Available data
404
bam
395
bigWig
299
bed narrowPeak
264
bigBed narrowPeak
262
fastq
104
tsv
45
bed broadPeak
45
bigBed broadPeak
14
tagAlign
2
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
405
Homo sapiens
Biosample type
1832
tissue
487
primary cell
405
cell line
260
in vitro differentiated cells
3
stem cell
Organ
263
liver
64
artery
64
blood vessel
64
heart
64
vasculature
55
pancreas
54
blood
bodily fluid
49
epithelium
12
kidney
8
embryo
Project
401
AMP
4
T1D
Genome assembly (visualization)
463
hg19
405
GRCh38
Lab
405
AMP-T2D consortium
Audit category:
57
inconsistent ontology term
1
inconsistent replicate
Audit category:
missing controlled_by
Audit category:
18
inconsistent control read length
2
inconsistent control run_type
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
September, 2017
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
405 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
256
5
1
1
smooth muscle cell of the coronary artery
4
52
8
EndoC_BH1
13
33
1
H1-hESC
8
Panc1
6
1
1
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