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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
83
ChIP-seq
17
ATAC-seq
1
DNase-seq
Assay category
127
Transcription
83
DNA binding
18
DNA accessibility
Target of assay
78
histone
78
histone modification
40
narrow histone mark
37
broad histone mark
transcription factor
6
RNA binding protein
5
control
3
chromatin remodeller
Date released
80
May, 2021
31
February, 2018
30
August, 2021
27
August, 2017
27
December, 2017
22
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
228
bam
206
bigWig
127
tsv
96
bed narrowPeak
85
fastq
14
tagAlign
13
bed bed3+
13
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Organism
228
Homo sapiens
Biosample type
1759
tissue
483
primary cell
228
in vitro differentiated cells
152
cell line
3
stem cell
Organ
32
connective tissue
18
embryo
17
epithelium
12
liver
1
heart
1
pancreas
Project
228
AMP
Genome assembly (visualization)
260
hg19
228
GRCh38
4
hg18
Lab
228
AMP-T2D consortium
Audit category:
96
inconsistent ontology term
Audit category:
7
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
December, 2018
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
228 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
adipocyte
4
26
1
neural progenitor cell
7
13
10
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
4
10
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