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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
Assay category
70
DNA binding
Target of assay
70
histone
70
histone modification
39
narrow histone mark
31
broad histone mark
9
RNA binding protein
9
transcription factor
3
control
1
chromatin remodeller
Date released
26
August, 2017
19
June, 2019
16
October, 2019
3
August, 2021
3
May, 2019
3
November, 2017
Available data
70
bam
70
bed narrowPeak
70
bigWig
47
bigBed narrowPeak
29
fastq
14
bed broadPeak
14
bigBed broadPeak
14
tagAlign
3
bed bed3+
Organism
70
Homo sapiens
Biosample type
487
tissue
78
in vitro differentiated cells
70
primary cell
31
cell line
2
stem cell
Organ
40
epithelium
14
pancreas
12
vasculature
11
blood vessel
10
kidney
10
vein
8
connective tissue
8
musculature of body
3
brain
3
liver
2
heart
1
eye
Project
70
AMP
Genome assembly (visualization)
72
hg19
70
GRCh38
Lab
Kyle Gaulton, UCSD
70
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
70 results
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ChIP-seq
primary cell
skeletal muscle myoblast
12
endothelial cell of umbilical vein
10
epithelial cell of proximal tubule
7
pancreatic alpha cell
7
pancreatic beta cell
7
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