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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
163
ChIP-seq
150
total RNA-seq
100
single cell RNA-seq
49
ATAC-seq
27
DNase-seq
2
small RNA-seq
1
Hi-C
Assay category
252
Transcription
163
DNA binding
76
DNA accessibility
1
3D chromatin structure
Target of assay
154
histone
154
histone modification
79
narrow histone mark
75
broad histone mark
9
RNA binding protein
9
transcription factor
3
control
1
chromatin remodeller
Date released
149
May, 2021
48
July, 2018
47
June, 2019
45
May, 2020
43
April, 2018
40
September, 2018
30
August, 2017
22
October, 2019
18
July, 2019
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
1
March, 2023
Available data
481
bam
475
bigWig
252
tsv
229
bed narrowPeak
185
fastq
105
bigBed narrowPeak
98
tagAlign
45
bed broadPeak
45
bigBed broadPeak
30
bed bed3+
1
bed bed3
1
hic
Organism
492
Homo sapiens
Biosample type
1834
tissue
492
primary cell
459
cell line
260
in vitro differentiated cells
3
stem cell
Organ
204
epithelium
148
pancreas
32
connective tissue
28
kidney
22
vasculature
18
blood vessel
14
brain
12
vein
11
liver
11
musculature of body
10
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
301
AMP
180
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
584
hg19
492
GRCh38
Lab
301
AMP-T2D consortium
180
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
ITG
Audit category:
36
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
lab.title!
Maike Sander, UCSD
BIOSAMPLE
ASSAY
492 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
primary cell
monocyte
84
53
13
pancreatic alpha cell
7
10
12
13
pancreatic beta cell
7
10
12
10
pancreatic acinar cell
4
12
5
pancreatic ductal cell
4
10
4
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