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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
564
ChIP-seq
177
DNase-seq
158
ATAC-seq
16
WGBS
16
small RNA-seq
6
single cell RNA-seq
Assay category
918
Transcription
564
DNA binding
335
DNA accessibility
16
DNA methylation
Target of assay
486
histone modification
485
histone
246
narrow histone mark
239
broad histone mark
75
transcription factor
26
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
163
June, 2019
162
May, 2020
160
October, 2019
136
August, 2017
116
July, 2018
92
May, 2019
64
April, 2019
64
August, 2021
61
July, 2019
57
November, 2017
45
October, 2018
40
May, 2024
39
November, 2019
38
May, 2021
36
December, 2017
35
February, 2023
22
November, 2018
12
May, 2023
11
October, 2017
9
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
March, 2019
2
September, 2017
Available data
1686
bigWig
1677
bam
917
tsv
878
bed narrowPeak
552
bigBed narrowPeak
255
fastq
190
bed bed3+
189
bed broadPeak
176
bigBed broadPeak
112
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
Organism
1827
Homo sapiens
Biosample type
1833
tissue
492
primary cell
cell line
260
in vitro differentiated cells
3
stem cell
Organ
468
connective tissue
410
adipose tissue
376
pancreas
238
liver
200
brain
191
heart
165
kidney
105
blood vessel
105
vasculature
96
limb
66
bone element
62
artery
42
musculature of body
31
nerve
18
ureter
16
spleen
8
skeleton
3
eye
pituitary gland
Project
1831
AMP
2
T1D
Genome assembly (visualization)
1833
GRCh38
1729
hg19
Lab
1715
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
biosample_type!
cell line
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
1833 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
tissue
adipose tissue
382
1
2
islet of Langerhans
260
15
1
22
6
liver
147
75
2
1
kidney
20
13
75
bone tissue
58
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