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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
156
ChIP-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
Assay category
156
DNA binding
12
Transcription
2
DNA accessibility
Target of assay
156
histone
156
histone modification
100
narrow histone mark
56
broad histone mark
3
control
Date released
78
October, 2019
52
November, 2017
25
May, 2019
12
July, 2019
3
October, 2017
Available data
212
bam
211
bigWig
198
bed narrowPeak
123
bigBed narrowPeak
79
tagAlign
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
12
fastq
12
tsv
1
tagAlign bed3+
Organism
170
Homo sapiens
Biosample type
167
tissue
3
primary cell
Organ
567
pancreas
540
connective tissue
477
liver
410
adipose tissue
253
epithelium
236
heart
176
blood vessel
176
vasculature
170
brain
127
kidney
124
artery
66
bone element
60
limb
54
blood
54
bodily fluid
29
embryo
29
nerve
20
musculature of body
15
spleen
10
vein
8
skeleton
2
eye
1
pericardium
1
pituitary gland
Project
170
AMP
Genome assembly (visualization)
170
GRCh38
126
hg19
Lab
170
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
170 results
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ChIP-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
tissue
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
caudate nucleus
11
substantia nigra
11
+ See 67 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
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