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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
1
Hi-C
Assay category
39
DNA binding
1
3D chromatin structure
Target of assay
21
histone
21
histone modification
11
broad histone mark
10
narrow histone mark
9
control
9
transcription factor
1
RNA binding protein
Date released
19
August, 2017
15
December, 2017
3
August, 2021
2
September, 2017
1
October, 2019
Available data
2880
bam
2851
bigWig
1591
bed narrowPeak
1400
tsv
990
bigBed narrowPeak
872
fastq
bed broadPeak
267
bigBed broadPeak
244
bed bed3+
243
tagAlign
64
xls
17
bed bedMethyl
17
bigBed bedMethyl
2
bed bed3
1
hdf5
1
hic
1
tagAlign bed3+
Organism
40
Homo sapiens
Biosample type
19
in vitro differentiated cells
14
tissue
3
primary cell
3
stem cell
1
cell line
Organ
12
pancreas
7
connective tissue
6
liver
3
embryo
3
epithelium
Project
40
AMP
Genome assembly (visualization)
55
hg19
40
GRCh38
Lab
40
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
10
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
40 results
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Clear Filters
ChIP-seq
Hi-C
in vitro differentiated cells
adipocyte
7
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
tissue
islet of Langerhans
11
liver
3
primary cell
hepatocyte
3
stem cell
hESC
3
cell line
Panc1
1
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