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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
Assay category
55
DNA binding
Target of assay
52
histone
52
histone modification
28
narrow histone mark
27
transcription factor
broad histone mark
4
chromatin remodeller
2
RNA binding protein
Date released
34
August, 2017
15
September, 2018
3
November, 2017
2
November, 2018
1
October, 2017
Available data
55
bam
55
bigWig
55
fastq
22
bed narrowPeak
13
bed bed3+
6
bigBed narrowPeak
1
bed broadPeak
1
tagAlign
Organism
55
Homo sapiens
Biosample type
23
primary cell
22
tissue
5
cell line
5
in vitro differentiated cells
Organ
32
pancreas
17
connective tissue
12
adipose tissue
11
epithelium
5
liver
1
brain
Project
55
AMP
Genome assembly (visualization)
62
hg19
55
GRCh38
Lab
55
AMP-T2D consortium
Audit category:
55
missing controlled_by
Audit category:
4
inconsistent control read length
4
inconsistent control run_type
lab.title!
Karen Mohlke, UNC
month_released!
July, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
55 results
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ChIP-seq
primary cell
pancreatic endocrine cell
12
pancreatic ductal cell
7
pancreatic acinar cell
4
tissue
white adipose tissue
12
islet of Langerhans
9
brain
1
cell line
HepG2
5
in vitro differentiated cells
adipocyte
5
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