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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
284
total RNA-seq
153
ChIP-seq
80
single cell RNA-seq
59
ATAC-seq
8
DNase-seq
4
WGBS
2
small RNA-seq
Assay category
366
Transcription
153
DNA binding
67
DNA accessibility
4
DNA methylation
Target of assay
133
histone
133
histone modification
68
broad histone mark
65
narrow histone mark
18
transcription factor
9
RNA binding protein
2
control
Date released
153
July, 2018
151
August, 2017
72
September, 2018
51
November, 2019
May, 2021
42
October, 2018
39
April, 2018
26
February, 2021
7
August, 2020
7
October, 2019
7
September, 2017
6
March, 2020
6
November, 2018
5
October, 2017
4
July, 2019
4
June, 2019
3
August, 2018
3
September, 2020
2
March, 2019
1
June, 2018
1
May, 2019
Available data
577
bam
566
bigWig
366
tsv
356
fastq
184
bed narrowPeak
88
bigBed narrowPeak
28
bed bed3+
13
bed broadPeak
7
bigBed broadPeak
5
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
Organism
585
Homo sapiens
Biosample type
349
tissue
192
primary cell
49
cell line
Organ
590
pancreas
565
connective tissue
531
liver
424
adipose tissue
285
epithelium
263
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
27
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
575
AMP
10
HPAP
5
T1D
Genome assembly (visualization)
612
hg19
590
GRCh38
Lab
577
AMP-T2D consortium
10
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
47
inconsistent ontology term
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
files.file_type!
bedpe
month_released!
May, 2021
BIOSAMPLE
ASSAY
590 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
tissue
islet of Langerhans
224
25
6
22
1
body of pancreas
2
26
4
4
2
2
pancreas
1
12
2
2
endocrine pancreas
14
primary cell
pancreatic alpha cell
10
7
12
13
pancreatic beta cell
10
7
12
10
pancreatic ductal cell
4
13
10
4
pancreatic acinar cell
4
8
12
5
pancreatic endocrine cell
23
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cell line
EndoC_BH1
29
12
1
Panc1
6
1
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