Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
58
ChIP-seq
3
ATAC-seq
1
DNase-seq
Assay category
89
Transcription
58
DNA binding
4
DNA accessibility
Target of assay
51
histone
51
histone modification
28
narrow histone mark
23
broad histone mark
7
transcription factor
2
RNA binding protein
Date released
153
July, 2018
151
August, 2017
72
September, 2018
November, 2019
43
May, 2021
42
October, 2018
39
April, 2018
26
February, 2021
7
August, 2020
7
October, 2019
7
September, 2017
6
March, 2020
6
November, 2018
5
October, 2017
4
July, 2019
4
June, 2019
3
August, 2018
3
September, 2020
2
March, 2019
1
June, 2018
1
May, 2019
Available data
151
bam
151
bigWig
151
fastq
89
tsv
41
bed narrowPeak
19
bed bed3+
15
bigBed narrowPeak
5
bed broadPeak
5
tagAlign
Organism
146
Homo sapiens
Biosample type
122
tissue
29
primary cell
Organ
151
pancreas
65
connective tissue
19
liver
17
epithelium
16
adipose tissue
Project
151
AMP
Genome assembly (visualization)
158
hg19
151
GRCh38
Lab
151
AMP-T2D consortium
Audit category:
22
missing controlled_by
Audit category:
8
inconsistent control read length
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
month_released!
November, 2019
BIOSAMPLE
ASSAY
151 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
tissue
islet of Langerhans
89
21
1
pancreas
11
primary cell
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
Download