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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
324
ChIP-seq
104
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
324
DNA binding
104
Transcription
12
DNA accessibility
1
DNA methylation
Target of assay
296
transcription factor
87
recombinant protein
53
RNA binding protein
23
histone
23
histone modification
18
chromatin remodeller
12
narrow histone mark
11
broad histone mark
2
other context
2
other post-translational modification
Date released
200
November, 2017
92
February, 2021
52
November, 2018
27
December, 2018
20
January, 2019
19
October, 2019
13
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
441
bam
432
bigWig
336
bed narrowPeak
301
bigBed narrowPeak
299
fastq
104
tsv
34
bed broadPeak
34
bigBed broadPeak
5
tagAlign
2
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
hdf5
Organism
441
Homo sapiens
Biosample type
1690
tissue
484
primary cell
441
cell line
248
in vitro differentiated cells
1
stem cell
Organ
246
liver
64
artery
64
blood vessel
64
heart
64
vasculature
54
blood
54
bodily fluid
54
pancreas
49
epithelium
12
kidney
8
embryo
Project
437
AMP
4
T1D
Genome assembly (visualization)
503
hg19
441
GRCh38
Lab
441
AMP-T2D consortium
Audit category:
57
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
6
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
files.file_type!
hdf5
month_released!
June, 2019
BIOSAMPLE
ASSAY
441 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
239
5
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
EndoC_BH1
13
33
1
H1-hESC
8
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