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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
345
ChIP-seq
177
DNase-seq
158
ATAC-seq
16
WGBS
1
total RNA-seq
Assay category
345
DNA binding
335
DNA accessibility
16
DNA methylation
1
Transcription
Target of assay
488
histone modification
487
histone
248
narrow histone mark
broad histone mark
93
transcription factor
27
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
114
October, 2019
64
August, 2021
46
August, 2017
36
May, 2019
35
February, 2023
33
December, 2017
27
April, 2019
25
October, 2018
22
November, 2018
20
May, 2024
20
November, 2019
19
May, 2020
19
November, 2017
14
July, 2019
12
May, 2023
9
October, 2017
8
February, 2021
3
December, 2018
2
January, 2019
2
March, 2019
2
March, 2020
2
September, 2017
Available data
1478
bam
1468
bigWig
tsv
639
bed narrowPeak
348
bigBed narrowPeak
233
fastq
198
bed bed3+
183
bed broadPeak
176
bigBed broadPeak
76
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
Organism
695
Homo sapiens
Biosample type
697
tissue
327
cell line
183
primary cell
89
in vitro differentiated cells
1
stem cell
Organ
153
kidney
133
brain
121
heart
80
pancreas
72
liver
65
blood vessel
65
vasculature
58
limb
48
artery
34
musculature of body
26
adipose tissue
26
connective tissue
18
ureter
12
spleen
11
nerve
8
bone element
8
skeleton
3
eye
1
pituitary gland
Project
695
AMP
2
T1D
Genome assembly (visualization)
697
GRCh38
636
hg19
Lab
599
AMP-T2D consortium
75
Katalin Susztak, Upenn
20
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
files.file_type!
tsv
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
697 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
total RNA-seq
tissue
kidney
10
13
75
liver
64
2
islet of Langerhans
19
1
22
coronary artery
3
2
36
body of pancreas
14
4
4
2
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