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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
511
ChIP-seq
189
total RNA-seq
170
DNase-seq
124
ATAC-seq
14
small RNA-seq
12
WGBS
Assay category
511
DNA binding
294
DNA accessibility
203
Transcription
12
DNA methylation
Target of assay
434
histone modification
433
histone
224
narrow histone mark
209
broad histone mark
76
transcription factor
19
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
1
control
Date released
February, 2021
162
May, 2020
161
October, 2019
159
June, 2019
91
May, 2019
64
April, 2019
64
August, 2021
57
July, 2019
57
November, 2017
40
May, 2024
36
December, 2017
35
February, 2023
34
August, 2017
16
November, 2018
12
May, 2023
9
October, 2017
6
January, 2019
6
March, 2020
5
October, 2018
3
December, 2018
2
May, 2021
1
November, 2019
Available data
904
bigWig
867
bam
777
bed narrowPeak
494
bigBed narrowPeak
202
tsv
178
bed broadPeak
177
bed bed3+
170
bigBed broadPeak
110
tagAlign
109
fastq
64
xls
12
bed bedMethyl
12
bigBed bedMethyl
1
tagAlign bed3+
Organism
1020
Homo sapiens
Biosample type
1020
tissue
341
primary cell
321
cell line
224
in vitro differentiated cells
1
stem cell
Organ
pancreas
237
liver
203
brain
191
heart
165
kidney
105
blood vessel
105
vasculature
90
limb
62
artery
42
musculature of body
36
adipose tissue
36
connective tissue
31
nerve
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
1020
AMP
Genome assembly (visualization)
1020
GRCh38
889
hg19
Lab
905
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
month_released!
February, 2021
organ_slims!
pancreas
BIOSAMPLE
ASSAY
1020 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
tissue
liver
74
147
2
1
kidney
20
13
75
coronary artery
3
2
36
left cardiac atrium
40
1
heart left ventricle
28
3
3
2
2
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