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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
716
total RNA-seq
91
ChIP-seq
29
ATAC-seq
9
DNase-seq
6
WGBS
6
single cell RNA-seq
4
small RNA-seq
Assay category
726
Transcription
91
DNA binding
38
DNA accessibility
6
DNA methylation
Target of assay
55
histone
55
histone modification
34
transcription factor
30
broad histone mark
25
narrow histone mark
13
RNA binding protein
2
control
Date released
444
February, 2021
135
August, 2017
116
July, 2018
44
October, 2018
39
November, 2019
36
May, 2021
14
July, 2019
7
November, 2018
6
April, 2018
6
October, 2017
5
June, 2019
3
March, 2020
2
March, 2019
2
September, 2017
1
May, 2019
1
May, 2023
Available data
857
bam
836
bigWig
725
tsv
188
fastq
103
bed narrowPeak
64
bigBed narrowPeak
33
bed bed3+
15
bed broadPeak
8
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
tagAlign
Organism
855
Homo sapiens
Biosample type
861
tissue
216
primary cell
55
cell line
50
in vitro differentiated cells
Organ
480
connective tissue
422
adipose tissue
381
pancreas
237
liver
203
brain
191
heart
165
kidney
105
blood vessel
105
vasculature
96
limb
66
bone element
62
artery
42
musculature of body
31
nerve
18
ureter
16
spleen
8
skeleton
3
eye
1
pituitary gland
Project
859
AMP
2
T1D
Genome assembly (visualization)
890
hg19
861
GRCh38
Lab
858
AMP-T2D consortium
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
861 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
small RNA-seq
tissue
adipose tissue
382
1
2
islet of Langerhans
260
25
22
1
6
bone tissue
58
body of pancreas
2
25
4
4
2
2
endocrine pancreas
14
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