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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
total RNA-seq
100
single cell RNA-seq
49
ATAC-seq
25
DNase-seq
9
ChIP-seq
2
small RNA-seq
1
Hi-C
Assay category
252
Transcription
74
DNA accessibility
9
DNA binding
1
3D chromatin structure
Target of assay
187
histone
histone modification
96
narrow histone mark
91
broad histone mark
9
RNA binding protein
9
transcription factor
3
control
1
chromatin remodeller
Date released
65
May, 2021
48
July, 2018
45
May, 2020
43
April, 2018
40
September, 2018
28
June, 2019
18
July, 2019
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2017
4
October, 2019
3
August, 2018
3
June, 2018
3
November, 2017
3
September, 2020
2
February, 2021
2
October, 2018
1
March, 2023
1
May, 2019
Available data
325
bam
319
bigWig
252
tsv
156
fastq
73
bed narrowPeak
56
bigBed narrowPeak
29
bed broadPeak
29
bigBed broadPeak
25
bed bed3+
1
bed bed3
1
hic
Organism
336
Homo sapiens
Biosample type
1365
tissue
426
cell line
336
primary cell
187
in vitro differentiated cells
1
stem cell
Organ
164
epithelium
134
pancreas
24
connective tissue
18
kidney
11
brain
10
vasculature
8
heart
8
liver
7
blood vessel
3
musculature of body
2
adipose tissue
2
artery
2
eye
vein
1
pericardium
Project
229
AMP
96
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
393
hg19
336
GRCh38
Lab
229
AMP-T2D consortium
96
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
ITG
Audit category:
19
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
organ_slims!
vein
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
336 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
ChIP-seq
small RNA-seq
Hi-C
primary cell
monocyte
53
13
pancreatic alpha cell
10
12
13
pancreatic beta cell
10
12
10
pancreatic acinar cell
4
12
5
pancreatic ductal cell
4
10
4
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