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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
18
ChIP-seq
3
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
WGBS
Assay category
398
Transcription
18
DNA binding
5
DNA accessibility
2
DNA methylation
Target of assay
17
transcription factor
5
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
386
February, 2021
16
August, 2017
12
July, 2019
5
October, 2018
1
June, 2019
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
423
bam
422
bigWig
398
tsv
23
fastq
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
423
Homo sapiens
Biosample type
421
tissue
2
primary cell
Organ
596
pancreas
563
connective tissue
525
liver
423
adipose tissue
266
heart
261
epithelium
217
brain
194
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
423
AMP
Genome assembly (visualization)
425
hg19
423
GRCh38
Lab
423
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
audit.WARNING.category!
inconsistent control run_type
month_released!
April, 2018
May, 2023
BIOSAMPLE
ASSAY
423 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
WGBS
tissue
adipose tissue
381
1
2
white adipose tissue
12
omental fat pad
4
3
1
1
2
subcutaneous adipose tissue
6
2
1
1
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
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