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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
Assay category
36
DNA binding
Target of assay
19
histone
19
histone modification
17
transcription factor
11
broad histone mark
8
narrow histone mark
6
chromatin remodeller
3
RNA binding protein
1
recombinant protein
Date released
15
November, 2017
11
December, 2017
7
August, 2017
2
February, 2018
1
November, 2018
Available data
36
bam
36
bed narrowPeak
36
bigWig
36
fastq
17
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
10
bed bed3+
9
tagAlign
Organism
36
Homo sapiens
Biosample type
17
in vitro differentiated cells
16
cell line
2
stem cell
1
tissue
Organ
17
liver
pancreas
6
connective tissue
5
epithelium
3
embryo
Project
36
AMP
Genome assembly (visualization)
39
hg19
36
GRCh38
Lab
36
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
43
inconsistent control read length
inconsistent control run_type
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
inconsistent control run_type
organ_slims!
pancreas
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
cell line
HepG2
16
stem cell
hESC
2
tissue
liver
1
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