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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
Assay category
39
DNA binding
Target of assay
22
histone
22
histone modification
17
transcription factor
13
broad histone mark
9
narrow histone mark
6
chromatin remodeller
3
RNA binding protein
1
recombinant protein
Date released
15
November, 2017
11
August, 2017
11
December, 2017
February, 2018
1
November, 2018
1
October, 2018
Available data
39
bam
39
bed narrowPeak
39
bigWig
39
fastq
22
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
10
bed bed3+
9
tagAlign
Organism
39
Homo sapiens
Biosample type
16
cell line
15
in vitro differentiated cells
6
tissue
primary cell
2
stem cell
Organ
17
liver
6
connective tissue
5
pancreas
3
embryo
1
epithelium
Project
39
AMP
Genome assembly (visualization)
42
hg19
39
GRCh38
Lab
39
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
45
inconsistent control read length
inconsistent control run_type
2
inconsistent assembly
audit.WARNING.category!
inconsistent control run_type
biosample_type!
primary cell
month_released!
February, 2018
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
cell line
HepG2
16
in vitro differentiated cells
adipocyte
6
Posterior foregut
2
definitive endodermal cell
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
tissue
pancreas
4
body of pancreas
1
liver
1
stem cell
hESC
2
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