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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
Assay category
46
DNA binding
Target of assay
23
histone
23
histone modification
23
transcription factor
14
broad histone mark
12
chromatin remodeller
9
narrow histone mark
5
RNA binding protein
1
recombinant protein
Date released
17
November, 2017
11
August, 2017
10
December, 2017
5
November, 2018
2
February, 2018
1
October, 2018
Available data
46
bam
46
bed narrowPeak
46
bigWig
46
fastq
28
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
10
bed bed3+
9
tagAlign
Organism
46
Homo sapiens
Biosample type
22
cell line
16
in vitro differentiated cells
6
tissue
2
stem cell
primary cell
Organ
23
liver
6
connective tissue
5
pancreas
3
embryo
epithelium
Project
46
AMP
Genome assembly (visualization)
50
hg19
46
GRCh38
Lab
46
AMP-T2D consortium
Audit category:
4
missing controlled_by
Audit category:
46
inconsistent control read length
6
inconsistent control run_type
2
inconsistent assembly
biosample_type!
primary cell
organ_slims!
epithelium
large intestine
BIOSAMPLE
ASSAY
46 results
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Clear Filters
ChIP-seq
cell line
HepG2
22
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
tissue
pancreas
4
body of pancreas
1
liver
1
stem cell
hESC
2
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