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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
Assay category
41
DNA binding
Target of assay
22
histone
22
histone modification
19
transcription factor
13
narrow histone mark
12
chromatin remodeller
9
broad histone mark
5
RNA binding protein
1
recombinant protein
Date released
17
November, 2017
16
August, 2017
December, 2017
5
November, 2018
2
February, 2018
1
October, 2018
Available data
41
bam
41
bed narrowPeak
41
bigWig
41
fastq
29
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
9
tagAlign
4
bed bed3+
Organism
41
Homo sapiens
Biosample type
22
cell line
8
in vitro differentiated cells
6
tissue
5
primary cell
Organ
23
liver
9
pancreas
6
connective tissue
4
epithelium
Project
41
AMP
Genome assembly (visualization)
45
hg19
41
GRCh38
Lab
41
AMP-T2D consortium
Audit category:
4
missing controlled_by
Audit category:
41
inconsistent control read length
7
inconsistent control run_type
3
inconsistent assembly
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
month_released!
December, 2017
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
cell line
HepG2
22
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
2
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
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