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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
88
ChIP-seq
1
Hi-C
Assay category
98
Transcription
88
DNA binding
1
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
136
May, 2021
45
May, 2020
5
March, 2020
1
March, 2023
Available data
196
bigWig
186
bam
98
tsv
88
bed narrowPeak
84
tagAlign
fastq
1
hic
Organism
187
Homo sapiens
Biosample type
181
primary cell
4
cell line
2
tissue
Organ
6
pancreas
4
epithelium
Project
AMP
186
T1D
1
ITG
Genome assembly (visualization)
189
hg19
187
GRCh38
Lab
180
Kyle Gaulton, UCSD
6
AMP-T2D consortium
1
ITG
Audit category:
8
inconsistent ontology term
award.project!
AMP
files.file_type!
fastq
month_released!
September, 2023
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
187 results
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total RNA-seq
ChIP-seq
Hi-C
primary cell
monocyte
53
84
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 21 more…
cell line
EndoC_BH1
2
2
tissue
islet of Langerhans
2
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