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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
total RNA-seq
85
ChIP-seq
10
ATAC-seq
1
Hi-C
Assay category
96
Transcription
85
DNA binding
10
DNA accessibility
1
3D chromatin structure
Target of assay
85
histone
85
histone modification
44
broad histone mark
41
narrow histone mark
Date released
136
May, 2021
45
May, 2020
7
August, 2020
March, 2020
3
September, 2020
1
March, 2023
Available data
191
bigWig
181
bam
96
tsv
85
bed narrowPeak
84
tagAlign
10
fastq
1
hic
Organism
192
Homo sapiens
Biosample type
191
primary cell
1
cell line
Organ
11
epithelium
11
pancreas
Project
AMP
181
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
192
GRCh38
184
hg19
Lab
180
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
AMP-T2D consortium
1
ITG
Audit category:
5
inconsistent ontology term
award.project!
AMP
month_released!
March, 2020
organ_slims!
vein
BIOSAMPLE
ASSAY
192 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
primary cell
monocyte
53
84
pancreatic alpha cell
7
pancreatic beta cell
3
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 23 more…
cell line
EndoC_BH1
1
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