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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
340
ChIP-seq
50
total RNA-seq
2
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
340
DNA binding
50
Transcription
4
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
305
transcription factor
88
recombinant protein
58
RNA binding protein
30
histone
30
histone modification
28
chromatin remodeller
16
broad histone mark
14
narrow histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
57
November, 2018
28
February, 2021
27
December, 2018
20
January, 2019
20
October, 2019
13
November, 2019
8
August, 2021
4
May, 2021
2
March, 2020
Available data
395
bam
394
bigWig
344
bed narrowPeak
323
bigBed narrowPeak
321
fastq
50
tsv
45
bed broadPeak
45
bigBed broadPeak
10
tagAlign
2
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
396
Homo sapiens
Biosample type
1752
tissue
396
cell line
338
primary cell
265
in vitro differentiated cells
3
stem cell
Organ
268
liver
64
artery
blood vessel
64
heart
64
vasculature
54
blood
54
bodily fluid
51
pancreas
45
epithelium
12
kidney
8
embryo
Project
396
AMP
T1D
Genome assembly (visualization)
462
hg19
396
GRCh38
Lab
396
AMP-T2D consortium
Audit category:
53
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
1
inconsistent assembly
award.project!
T1D
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
396 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
261
5
1
1
GM12878
54
EndoC_BH1
11
31
1
H1-hESC
8
Panc1
6
1
1
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