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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
total RNA-seq
70
single cell RNA-seq
10
ATAC-seq
Assay category
144
Transcription
10
DNA accessibility
Date released
33
April, 2018
33
July, 2018
26
February, 2021
26
September, 2018
7
August, 2020
6
May, 2021
5
December, 2019
5
July, 2019
3
August, 2018
3
October, 2019
3
September, 2020
2
October, 2018
1
June, 2018
1
November, 2019
Available data
288
bigWig
280
bam
181
fastq
144
tsv
bed narrowPeak
75
bigBed narrowPeak
20
bed broadPeak
20
bigBed broadPeak
19
bed bed3+
5
tagAlign
Organism
154
Homo sapiens
Biosample type
120
primary cell
32
cell line
2
in vitro differentiated cells
Organ
495
connective tissue
445
pancreas
413
adipose tissue
164
liver
154
epithelium
76
heart
59
blood vessel
59
vasculature
58
bone element
54
artery
23
kidney
16
brain
15
embryo
7
musculature of body
5
limb
4
nerve
2
spleen
1
pericardium
Project
144
AMP
10
HPAP
T1D
Genome assembly (visualization)
164
hg19
154
GRCh38
Lab
144
AMP-T2D consortium
10
Klaus Kaestner, Upenn
Audit category:
33
inconsistent ontology term
award.project!
T1D
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
154 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
primary cell
pancreatic alpha cell
10
12
7
pancreatic beta cell
10
12
3
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
31
glomerular visceral epithelial cell
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
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