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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
158
ChIP-seq
Assay category
158
DNA binding
Target of assay
153
histone
153
histone modification
95
narrow histone mark
58
broad histone mark
5
transcription factor
Date released
54
November, 2017
40
October, 2019
19
May, 2020
17
August, 2017
16
August, 2021
6
October, 2017
5
May, 2021
1
February, 2021
Available data
2616
bam
2595
bigWig
1416
bed narrowPeak
1239
tsv
949
fastq
920
bigBed narrowPeak
271
bed broadPeak
256
bigBed broadPeak
249
bed bed3+
158
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
2
bed bed3
1
hdf5
1
hic
1
tagAlign bed3+
Organism
152
Homo sapiens
Biosample type
116
tissue
18
in vitro differentiated cells
14
primary cell
10
cell line
Organ
82
brain
31
liver
8
pancreas
5
epithelium
4
artery
blood vessel
4
heart
4
vasculature
1
pituitary gland
Project
158
AMP
T1D
Genome assembly (visualization)
158
GRCh38
150
hg19
Lab
158
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
9
inconsistent control read length
2
inconsistent assembly
award.project!
T1D
month_released!
December, 2019
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
158 results
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Clear Filters
ChIP-seq
tissue
liver
19
caudate nucleus
12
substantia nigra
12
layer of hippocampus
11
brain
6
+ See 40 more…
in vitro differentiated cells
neural progenitor cell
13
cardiomyocytes
3
pancreatic PP cell
2
primary cell
skeletal muscle myoblast
11
hepatocyte
3
cell line
HepG2
9
iPSC derived cell line
1
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