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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
34
DNase-seq
9
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
single cell RNA-seq
Assay category
195
DNA binding
37
DNA accessibility
16
Transcription
Target of assay
192
histone
192
histone modification
115
narrow histone mark
77
broad histone mark
3
RNA binding protein
3
control
3
transcription factor
Date released
109
October, 2019
63
November, 2017
30
June, 2019
25
May, 2019
12
July, 2019
7
October, 2017
2
November, 2018
Available data
246
bam
245
bigWig
228
bed narrowPeak
152
bigBed narrowPeak
82
tagAlign
48
bed broadPeak
40
bigBed broadPeak
34
bed bed3+
16
tsv
15
fastq
1
tagAlign bed3+
Organism
248
Homo sapiens
Biosample type
234
tissue
14
primary cell
Organ
635
pancreas
566
connective tissue
531
liver
424
adipose tissue
294
epithelium
266
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
248
AMP
Genome assembly (visualization)
248
GRCh38
195
hg19
Lab
248
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
award.project!
community
BIOSAMPLE
ASSAY
248 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
single cell RNA-seq
tissue
tibial nerve
24
2
4
1
brain
11
14
1
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
+ See 74 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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