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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ATAC-seq
42
ChIP-seq
1
total RNA-seq
Assay category
113
DNA accessibility
42
DNA binding
1
Transcription
Target of assay
37
histone
37
histone modification
20
broad histone mark
17
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
64
August, 2021
40
May, 2024
35
February, 2023
12
May, 2023
2
March, 2019
2
October, 2019
1
October, 2017
Available data
1710
bigWig
bam
917
tsv
881
bed narrowPeak
555
bigBed narrowPeak
280
fastq
204
bed bed3+
191
bed broadPeak
176
bigBed broadPeak
116
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
Organism
156
Homo sapiens
Biosample type
156
tissue
1
cell line
Organ
75
heart
75
kidney
35
artery
35
blood vessel
35
vasculature
3
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
156
AMP
Genome assembly (visualization)
156
GRCh38
107
hg19
Lab
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
38
AMP-T2D consortium
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
files.file_type!
bam
vcf
BIOSAMPLE
ASSAY
156 results
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ATAC-seq
ChIP-seq
total RNA-seq
tissue
kidney
75
left cardiac atrium
40
coronary artery
35
islet of Langerhans
3
adipose tissue
1
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