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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ATAC-seq
2
ChIP-seq
1
Hi-C
1
total RNA-seq
Assay category
78
DNA accessibility
2
DNA binding
1
3D chromatin structure
1
Transcription
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
64
August, 2021
12
May, 2023
3
October, 2019
2
March, 2019
1
October, 2017
Available data
bam
2511
bigWig
1354
bed narrowPeak
1232
tsv
941
fastq
904
bigBed narrowPeak
252
bed broadPeak
237
bigBed broadPeak
228
bed bed3+
158
tagAlign
64
xls
11
bed bedMethyl
11
bigBed bedMethyl
2
bed bed3
1
hdf5
1
tagAlign bed3+
Organism
82
Homo sapiens
Biosample type
81
tissue
1
cell line
Organ
heart
75
kidney
35
artery
35
blood vessel
35
vasculature
4
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
82
AMP
10
HPAP
1
ITG
Genome assembly (visualization)
206
hg19
82
GRCh38
5
hg18
Lab
75
Katalin Susztak, Upenn
4
AMP-T2D consortium
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent assembly
files.file_type!
bam
organ_slims!
heart
BIOSAMPLE
ASSAY
82 results
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Clear Filters
ATAC-seq
ChIP-seq
Hi-C
total RNA-seq
tissue
kidney
75
islet of Langerhans
3
adipose tissue
1
dorsal plus ventral thalamus
1
planum polare
1
cell line
Panc1
1
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