Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
145
ChIP-seq
89
total RNA-seq
5
ATAC-seq
2
DNase-seq
2
WGBS
Assay category
145
DNA binding
89
Transcription
7
DNA accessibility
2
DNA methylation
Target of assay
97
histone modification
96
histone
50
narrow histone mark
46
transcription factor
45
broad histone mark
7
RNA binding protein
3
chromatin remodeller
2
control
Date released
568
February, 2021
280
November, 2017
243
August, 2017
210
June, 2019
207
October, 2019
164
July, 2018
162
May, 2020
140
May, 2021
105
August, 2021
96
May, 2019
79
July, 2019
79
November, 2018
77
December, 2017
72
September, 2018
64
April, 2019
57
November, 2019
49
April, 2018
47
October, 2018
40
May, 2024
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
14
October, 2017
12
May, 2023
11
March, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
2
March, 2019
Available data
243
bam
243
fastq
241
bigWig
112
bed narrowPeak
89
tsv
33
bed bed3+
32
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
Organism
243
Homo sapiens
Biosample type
152
tissue
49
in vitro differentiated cells
42
primary cell
Organ
146
pancreas
65
connective tissue
19
liver
17
epithelium
16
adipose tissue
Project
243
AMP
Genome assembly (visualization)
270
hg19
243
GRCh38
Lab
243
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
243 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
tissue
islet of Langerhans
21
89
1
liver
18
white adipose tissue
12
pancreas
6
adipose tissue
1
2
+ See 2 more…
in vitro differentiated cells
adipocyte
48
1
primary cell
skeletal muscle myoblast
13
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
See all biosamples
Download