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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1179total RNA-seq
  • 1178ChIP-seq
  • 224ATAC-seq
  • 207DNase-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 1Hi-C
Assay category
  • 1303Transcription
  • 1178DNA binding
  • 431DNA accessibility
  • 17DNA methylation
  • 13D chromatin structure
Target of assay
  • 716histone modification
  • 715histone
  • 448transcription factor
  • 366narrow histone mark
  • 348broad histone mark
  • 100RNA binding protein
  • 88recombinant protein
  • 34chromatin remodeller
  • 12control
  • 5other context
  • 5other post-translational modification
Date released
  • 568February, 2021
  • 280November, 2017
  • 249August, 2017
  • 210June, 2019
  • 207October, 2019
  • 164July, 2018
  • 162May, 2020
  • 140May, 2021
  • 105August, 2021
  • 96May, 2019
  • 79July, 2019
  • 79November, 2018
  • 77December, 2017
  • 72September, 2018
  • 64April, 2019
  • 57November, 2019
  • 49April, 2018
  • 47October, 2018
  • 40May, 2024
  • 35February, 2023
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 14October, 2017
  • 12May, 2023
  • 11March, 2020
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 2March, 2019
Available data
  • 2773bam
  • 2734bigWig
  • 1544bed narrowPeak
  • 1302tsv
  • 998bigBed narrowPeak
  • 941fastq
  • 282bed broadPeak
  • 267bigBed broadPeak
  • 258bed bed3+
  • 162tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1tagAlign bed3+
Organism
  • 2924Homo sapiens
Biosample type
  • 1857tissue
  • 460cell line
  • 345primary cell
  • 265in vitro differentiated cells
  • 3stem cell
Organ
  • 619pancreas
  • 566connective tissue
  • 531liver
  • 424adipose tissue
  • 280epithelium
  • 266heart
  • 217brain
  • 205kidney
  • 191vasculature
  • 187blood vessel
  • 128artery
  • 96limb
  • 66bone element
  • 54blood
  • 54bodily fluid
  • 53musculature of body
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 12vein
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2930AMP
  • 186T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 3024hg19
  • 2930GRCh38
  • 5hg18
Lab
  • 2812AMP-T2D consortium
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 1Bing Ren, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 188inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 79missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 7inconsistent control run_type
  • 4inconsistent assembly
BIOSAMPLE
ASSAY

2930 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue38212
islet of Langerhans260232216
liver1477521
kidney207513
bone tissue58
cell line
HepG2526111
smooth muscle cell of the coronary artery5248
GM1287854
EndoC_BH131111
H1-hESC8
primary cell
pancreatic beta cell107712
pancreatic alpha cell107612
pancreatic ductal cell413410
pancreatic acinar cell48512
pancreatic endocrine cell23
in vitro differentiated cells
cardiomyocytes593
adipocyte4481
neural progenitor cell71310
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm413
stem cell
hESC3
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