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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
260
total RNA-seq
23
ChIP-seq
22
ATAC-seq
6
single cell RNA-seq
1
DNase-seq
Assay category
266
Transcription
23
DNA accessibility
23
DNA binding
Target of assay
16
histone
16
histone modification
10
narrow histone mark
7
transcription factor
6
broad histone mark
RNA binding protein
2
control
Date released
116
July, 2018
109
August, 2017
38
November, 2019
36
May, 2021
6
April, 2018
2
March, 2019
2
March, 2020
2
September, 2017
1
October, 2017
Available data
309
bam
289
bigWig
266
tsv
120
fastq
33
bed narrowPeak
19
bed bed3+
1
bed broadPeak
1
bigBed narrowPeak
Organism
312
Homo sapiens
Biosample type
312
tissue
Organ
312
pancreas
Project
310
AMP
2
T1D
Genome assembly (visualization)
342
hg19
312
GRCh38
Lab
309
AMP-T2D consortium
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
9
missing controlled_by
organ_slims!
large intestine
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
312 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
tissue
islet of Langerhans
260
23
22
6
1
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