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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
single cell RNA-seq
42
total RNA-seq
10
ATAC-seq
Assay category
112
Transcription
10
DNA accessibility
Date released
33
April, 2018
33
July, 2018
26
September, 2018
7
August, 2020
5
December, 2019
5
July, 2019
3
August, 2018
3
September, 2020
2
May, 2021
2
October, 2018
2
October, 2019
1
June, 2018
Available data
244
bigWig
235
bam
181
fastq
bed narrowPeak
112
tsv
74
bigBed narrowPeak
20
bed broadPeak
20
bigBed broadPeak
19
bed bed3+
5
tagAlign
Organism
122
Homo sapiens
Biosample type
120
primary cell
cell line
2
in vitro differentiated cells
Organ
495
connective tissue
413
adipose tissue
412
pancreas
157
liver
122
epithelium
58
bone element
22
heart
19
kidney
16
brain
7
embryo
6
blood vessel
6
vasculature
5
limb
5
musculature of body
4
nerve
2
artery
2
spleen
1
pericardium
Project
112
AMP
10
HPAP
Genome assembly (visualization)
128
hg19
122
GRCh38
Lab
112
AMP-T2D consortium
10
Klaus Kaestner, Upenn
Audit category:
2
inconsistent ontology term
biosample_type!
cell line
files.file_type!
bed narrowPeak
month_released!
March, 2020
BIOSAMPLE
ASSAY
122 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
primary cell
pancreatic alpha cell
12
10
7
pancreatic beta cell
12
10
3
pancreatic acinar cell
12
4
pancreatic ductal cell
10
4
pancreatic delta cell
11
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in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
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