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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
DNase-seq
32
ChIP-seq
11
ATAC-seq
7
total RNA-seq
1
small RNA-seq
Assay category
89
DNA accessibility
32
DNA binding
8
Transcription
Target of assay
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
2
RNA binding protein
2
transcription factor
Date released
80
June, 2019
August, 2021
18
April, 2019
11
May, 2023
10
October, 2019
6
July, 2019
4
May, 2019
Available data
118
bam
118
bigWig
110
bed narrowPeak
102
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
8
tsv
Organism
129
Homo sapiens
Biosample type
101
tissue
28
primary cell
cell line
Organ
580
pancreas
566
connective tissue
424
adipose tissue
260
liver
242
epithelium
217
brain
202
heart
129
kidney
127
vasculature
123
blood vessel
96
limb
66
bone element
64
artery
53
musculature of body
31
nerve
21
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
129
AMP
Genome assembly (visualization)
129
GRCh38
116
hg19
Lab
118
AMP-T2D consortium
11
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
biosample_type!
cell line
month_released!
August, 2021
BIOSAMPLE
ASSAY
129 results
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DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
small RNA-seq
tissue
kidney
13
20
11
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 5 more…
primary cell
epithelial cell of proximal tubule
1
8
1
kidney epithelial cell
1
4
1
kidney tubule cell
2
1
glomerular endothelial cell
1
1
glomerular visceral epithelial cell
2
+ See 3 more…
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