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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1173total RNA-seq
  • 920ChIP-seq
  • 224ATAC-seq
  • 205DNase-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 16WGBS
  • 1Hi-C
Assay category
  • 1297Transcription
  • 920DNA binding
  • 429DNA accessibility
  • 16DNA methylation
  • 13D chromatin structure
Target of assay
  • 772histone modification
  • 771histone
  • 394narrow histone mark
  • 376broad histone mark
  • 139transcription factor
  • 42RNA binding protein
  • 12control
  • 6chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 476February, 2021
  • 271May, 2021
  • 249August, 2017
  • 210June, 2019
  • 207May, 2020
  • 187October, 2019
  • 164July, 2018
  • 97August, 2021
  • 96May, 2019
  • 79July, 2019
  • 77December, 2017
  • 72September, 2018
  • 64April, 2019
  • 63November, 2017
  • 49April, 2018
  • 47October, 2018
  • 44November, 2019
  • 40May, 2024
  • 35February, 2023
  • 31February, 2018
  • 22November, 2018
  • 14October, 2017
  • 12May, 2023
  • 11March, 2020
  • 7August, 2020
  • 7September, 2017
  • 6January, 2019
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3December, 2018
  • 3June, 2018
  • 3September, 2020
  • 2March, 2019
  • 1March, 2023
Available data
  • 2496bam
  • 2476bigWig
  • 1296tsv
  • 1274bed narrowPeak
  • 675bigBed narrowPeak
  • 630fastq
  • 256bed bed3+
  • 237bed broadPeak
  • 232tagAlign
  • 222bigBed broadPeak
  • 64xls
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 1bed bed3
  • 1hic
  • 1tagAlign bed3+
Organism
  • 2657Homo sapiens
Biosample type
  • 1859tissue
  • 536primary cell
  • cell line
  • 265in vitro differentiated cells
  • 3stem cell
Organ
  • 580pancreas
  • 566connective tissue
  • 424adipose tissue
  • 263liver
  • 245epithelium
  • 217brain
  • 202heart
  • 193kidney
  • 127vasculature
  • 123blood vessel
  • 96limb
  • 66bone element
  • 64artery
  • 53musculature of body
  • 31nerve
  • 21embryo
  • 18ureter
  • 16spleen
  • 12vein
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2470AMP
  • 182T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 2683hg19
  • 2663GRCh38
  • 5hg18
Lab
  • 2354AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 139inconsistent ontology term
  • 27inconsistent control
Audit category:
  • 74missing controlled_by
Audit category:
  • 30inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

2663 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue38212
islet of Langerhans260252216
liver1477521
kidney207513
bone tissue58
primary cell
monocyte538413
pancreatic alpha cell1071312
pancreatic beta cell1071012
pancreatic ductal cell413410
pancreatic acinar cell48512
in vitro differentiated cells
cardiomyocytes593
adipocyte4481
neural progenitor cell71310
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm413
stem cell
hESC3
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